| Human Pseudogene Annotation |
GENCODE Annotation- Data: The current human pseudogene annotation is in GENCODE 21. . - Description: The GENCODE annotation of pseudogenes contains models that have been created by the Human and Vertebrate Analysis and Annotation (HAVANA) team, an expert manual annotation team at the Wellcome Trust Sanger Institute. This is informed by, and checked against, computational pseudogene predictions by thePseudoPipe and RetroFinder pipelines. PseudoPipe Output- Data: The current PseudoPipe results are on Ensembl genome release 79. . - Description: Genome-wide human pseudogene annotation predicted by PseudoPipe. PseudoPipe is a homology-based computational pipeline that searches a mammalian genome and identifies pseudogene sequences. - Reference: Other Human Pseudogene Sets- Data: . - Description: Archived pseudogene annotation on previous human genome releases from PseudoPipe. Genome-wide annotation or specific subset. |
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假基因资源中心
假基因是原来的能翻译成蛋白的基因经过各种突变导致丧失功能的基因。
比如
PTEN-->PTENP1
KRAS-->KRASP1
NANOG-->NANOGP1
很好理解，一般来说看到结尾是P1,等字眼的都是假基因，现在共有一万多假基因，我一般以http://www.genenames.org/cgi-bin/statistics （人类基因命名委员会）为标准参考。
研究的时候可能需要更全面一点，所以我又谷歌了一下，发现了一个还算比较全面的收集。
就是 http://pseudogene.org/Human/ （中心网站）
现在主要是 ENCODE计划的GENCODE 21. 和 耶鲁大学的Ensembl genome release 79.