Lecture1_bioinfo-environment11_module

Jimmyjmzeng1314@outlook.com

Keywords: module/package/library/perl/R/python

1          Module for perl

1.1         cpan

1.2         source code

2          Module for R

2.1         Cran(bioconductor)

2.2         source code

3          Module for python

3.1         Setuptools/pip 

3.2         source code

 

Perl

R

python

Library path

@INC

.libPaths()

PYTHONPATH

Install online

cpan

Install.package()

pip

source code

perl Makefile.PL

Install.package(path=)

Python setup.py

Binary code

Tar zxvf

Tar zxvf

Tar zxvf

 

useful links : http://www.bio-info-trainee.com/?p=1005

                  http://www.bio-info-trainee.com/?p=571

               http://www.bio-info-trainee.com/?p=540

          http://www.bio-info-trainee.com/?p=581

          http://perldoc.perl.org/index.html

          http://www.bio-info-trainee.com/?p=579