生信菜鸟团 » Cancer5000 http://www.bio-info-trainee.com 欢迎去论坛biotrainee.com留言参与讨论，或者关注同名微信公众号biotrainee Sat, 28 Jun 2025 14:30:13 +0000 zh-CN hourly 1 https://wordpress.org/?v=4.1.33 TCGA数据库的癌症种类以及癌症相关基因列表 http://www.bio-info-trainee.com/960.html http://www.bio-info-trainee.com/960.html#comments Fri, 28 Aug 2015 09:40:32 +0000 http://www.bio-info-trainee.com/?p=960 Continue reading →]]> TCGA projects 里面包含的癌症种类非常多，但是我们分析数据时候常常用pan-cancer 12，pan-cancer 17，pan-cancer 21来表示数据集有多少种癌症，一般文献会给出癌症的简称或者全名：

BLCA, BRCA, COADREAD, GBM, HNSC, KIRC, LAML, LGG, LUAD, LUSC, OV, PRAD, SKCM, STAD, THCA, UCEC.

Acute myeloid leukaemia
Bladder
Breast
Carcinoid
Chronic lymphocytic leukaemia
Colorectal
Diffuse large B-cell lymphoma
Endometrial
Oesophageal adenocarcinoma
Glioblastoma multiforme
Head and neck
Kidney clear cell
Lung adenocarcinoma
Lung squamous cell carcinoma
Medulloblastoma
Melanoma
Multiple myeloma
Neuroblastoma
Ovarian
Prostate
Rhabdoid tumour

HCD features: download

这是高置信度的癌症驱动基因列表：共280多个基因
Cancer5000 features: download

这是一篇对接近5000个癌症样本的研究得到的癌症相关基因列表：共230多个基因

参考：http://bg.upf.edu/oncodrive-role/

http://bioinformatics.oxfordjournals.org/content/30/17/i549.full

http://www.nature.com/nature/journal/v505/n7484/full/nature12912.html?WT.ec_id=NATURE-20140123

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