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	<title>生信菜鸟团 &#187; 镜像</title>
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		<title>R包精讲第三篇：如何切换镜像？</title>
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		<pubDate>Tue, 12 Apr 2016 13:11:53 +0000</pubDate>
		<dc:creator><![CDATA[ulwvfje]]></dc:creator>
				<category><![CDATA[R]]></category>
		<category><![CDATA[bioconductor]]></category>
		<category><![CDATA[镜像]]></category>

		<guid isPermaLink="false">http://www.bio-info-trainee.com/?p=1561</guid>
		<description><![CDATA[这个技巧很重要，一般来说，R语言自带的install.packages函数来安装 &#8230; <a href="http://www.bio-info-trainee.com/1561.html">Continue reading <span class="meta-nav">&#8594;</span></a>]]></description>
				<content:encoded><![CDATA[<p>这个技巧很重要，一般来说，R语言自带的install.packages函数来安装一个包时，都是用的默认的镜像！</p>
<p>如果你是用的Rstudio这个IDE，你的默认镜像就是： <a href="https://cran.rstudio.com/bin/windows/contrib/3.2/">https://cran.rstudio.com/ </a></p>
<p>如果你直接用的R语言，那么就是："http://cran.us.r-project.org" 但是一般你安装的时候会提醒你选择。</p>
<p><span id="more-1561"></span></p>
<p>而我们一般需要更改成自己最方便的</p>
<blockquote><p>  install.packages(pkgs, lib,<strong> repos = getOption("repos"),</strong><br />
<strong> contriburl = contrib.url(repos, type),</strong><br />
method, available = NULL, destdir = NULL,<br />
dependencies = NA, type = getOption("pkgType"),<br />
configure.args = getOption("configure.args"),<br />
configure.vars = getOption("configure.vars"),<br />
clean = FALSE, Ncpus = getOption("Ncpus", 1L),<br />
verbose = getOption("verbose"),<br />
libs_only = FALSE, INSTALL_opts, quiet = FALSE,<br />
keep_outputs = FALSE, ...)</p></blockquote>
<p>如果是在国内， install.packages("ABC",repos="<span class="GEM3DMTCPFB  ace_constant ace_language">http://mirror.bjtu.edu.cn/ </span>"),换成北大的镜像，飞一般的感觉！</p>
<p>如果想永久设置，就用options修改即可。<span class="GEM3DMTCPFB  ace_constant ace_language"><br />
</span></p>
<p>如果你是Rstudio的IDE，那么直接进入全局设置，一劳永逸的选择好镜像！</p>
<p><a href="http://www.bio-info-trainee.com/wp-content/uploads/2016/04/tmp.png"><img class="alignnone size-full wp-image-1562" src="http://www.bio-info-trainee.com/wp-content/uploads/2016/04/tmp.png" alt="tmp" width="488" height="406" /></a></p>
<p>你可以check一下每个镜像的包是不是一致的：</p>
<p>dim(available.packages(contriburl = "<span style="color: #ff0000;"><strong>http://cran.rstudio.com/</strong></span>bin/windows/contrib/<span style="color: #ff0000;">3.2</span>/"))</p>
<p>更改镜像主页及包的版本即可查看所有镜像各提供哪些包！</p>
<p>当然，我们的bioconductor其实也是有镜像的，只是大部分人都不知道，也不会去用而已！</p>
<blockquote>
<div>source("<a href="http://bioconductor.org/biocLite.R">http://bioconductor.org/biocLite.R</a>")</div>
<div>options(BioC_mirror="<a href="http://mirrors.ustc.edu.cn/bioc/">http://mirrors.ustc.edu.cn/bioc/</a>")</div>
<div>biocLite("RGalaxy")##这样就用中科大的镜像来下载包啦</div>
</blockquote>
<div>## bioconductor还有很多其它镜像：<a href="https://www.bioconductor.org/about/mirrors/">https://www.bioconductor.org/about/mirrors/</a></div>
<div>##<a href="https://stat.ethz.ch/R-manual/R-devel/library/utils/html/chooseBioCmirror.html">https://stat.ethz.ch/R-manual/R-devel/library/utils/html/chooseBioCmirror.html</a></div>
<p>&nbsp;</p>
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