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	<title>生信菜鸟团 &#187; 三代测序</title>
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		<title>阅读文献下载原始reads之pacbio全基因组数据</title>
		<link>http://www.bio-info-trainee.com/1929.html</link>
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		<pubDate>Fri, 07 Oct 2016 12:02:27 +0000</pubDate>
		<dc:creator><![CDATA[ulwvfje]]></dc:creator>
				<category><![CDATA[基础数据库]]></category>
		<category><![CDATA[pacbio]]></category>
		<category><![CDATA[三代测序]]></category>

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		<description><![CDATA[目录 一：文献解读 二：NCBI搜索 三：构建脚本下载所有reads压缩包 四： &#8230; <a href="http://www.bio-info-trainee.com/1929.html">Continue reading <span class="meta-nav">&#8594;</span></a>]]></description>
				<content:encoded><![CDATA[<p>目录</p>
<p>一：文献解读</p>
<p>二：NCBI搜索</p>
<p>三：构建脚本下载所有reads压缩包</p>
<p>四：用sra-toolkit解压<span id="more-1929"></span></p>
<p>正文</p>
<p>一：文献解读</p>
<p>NCBI的原始reads数据里面最重要的就是SRP023104这样的字符串，能定位下载数据，也能定位原始文献。</p>
<p>文献地址如下</p>
<p><a href="http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4036802/">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4036802/</a></p>
<p>&nbsp;</p>
<p>该研究小组还做了很多关于这个足部疾病的工作，其它文献地址如下</p>
<p><a href="https://www.hgsc.bcm.edu/human/charcot-marie-tooth-project">https://www.hgsc.bcm.edu/human/charcot-marie-tooth-project</a></p>
<p>二：NCBI搜索</p>
<p><a href="http://www.ncbi.nlm.nih.gov/sra/SRX852869%5baccn%5d">http://www.ncbi.nlm.nih.gov/sra/SRX852869[accn]</a></p>
<p><strong><a href="http://www.ncbi.nlm.nih.gov/sra/SRX852869%5baccn%5d">SRX852869</a></strong><strong>: PacBio whole genome sequencing of Homo sapien personal sample HS-1011</strong><br />
88 PACBIO_SMRT (PacBio RS II) runs:<strong><span style="color: #ff0000;"> 14.4M spots, 89.6G bases, 319.9Gb downloads</span></strong></p>
<p>这些数据都是可以下载的！！！</p>
<p><a href="http://www.bio-info-trainee.com/wp-content/uploads/2016/10/wxid_81t1aioe6cx122_1475841674027_6.png"><img class="alignnone size-full wp-image-1930" src="http://www.bio-info-trainee.com/wp-content/uploads/2016/10/wxid_81t1aioe6cx122_1475841674027_6.png" alt="wxid_81t1aioe6cx122_1475841674027_6" width="592" height="410" /></a></p>
<p>如果有多余服务器资源，可以考虑下载玩玩这些数据！</p>
<p>这是很久以前的一个草稿帖子了，居然忘记发了，正好我开始有新的服务器了，一定要抽空玩一下三代测序啦！</p>
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